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Publications

Limited evolution despite years of measurable viremia in a cART-treated seronegative HIV-1 positive individual

Fryer H. et al, (2020)

Estimation of hepatitis B virus cccDNA persistence in chronic infection using within-host evolutionary rates

Lythgoe K. et al, (2020)

Bimodal distribution and set point HBV DNA viral loads in chronic infection: retrospective analysis of cohorts from the UK and South Africa

Downs LO. et al, (2020)

HIV-1 founder variant multiplicity is determined by the infection stage of the source partner

Villabona-Arenas CJ. et al, (2019)

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

Illingworth C. et al, (2019)

Biotic analogies for self-organising cities

Narraway C. et al, (2019), Environment and Planning B: Urban Analytics and City Science

CpG-creating Mutations are Costly in Many Human Viruses

Caudill V. et al, (2019)

High-Resolution Evolutionary Analysis of Within-Host Hepatitis C Virus Infection.

Raghwani J. et al, (2019), The Journal of infectious diseases, 219, 1722 - 1729

Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission.

Thompson RN. et al, (2019), Virus evolution, 5

Structure-Guided Identification of a Nonhuman Morbillivirus with Zoonotic Potential.

Abdullah N. et al, (2018), Journal of virology, 92

Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission

Thompson R. et al, (2018)

High resolution evolutionary analysis of within-host hepatitis C virus infection

Raghwani J. et al, (2018)

Evolution of HIV-1 within untreated individuals and at the population scale in Uganda.

Raghwani J. et al, (2018), PLoS pathogens, 14

Hepatitis B Virus Adaptation to the CD8+ T Cell Response: Consequences for Host and Pathogen.

Lumley SF. et al, (2018), Frontiers in immunology, 9

Short-Sighted Virus Evolution and a Germline Hypothesis for Chronic Viral Infections.

Lythgoe KA. et al, (2017), Trends in microbiology, 25, 336 - 348

Effect of the Latent Reservoir on the Evolution of HIV at the Within- and Between-Host Levels.

Doekes HM. et al, (2017), PLoS computational biology, 13

A transmission-virulence evolutionary trade-off explains attenuation of HIV-1 in Uganda.

Blanquart F. et al, (2016), eLife, 5

Large Variations in HIV-1 Viral Load Explained by Shifting-Mosaic Metapopulation Dynamics.

Lythgoe KA. et al, (2016), PLoS biology, 14

Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective.

Fraser C. et al, (2014), Science (New York, N.Y.), 343

Preexposure prophylaxis will have a limited impact on HIV-1 drug resistance in sub-Saharan Africa: a comparison of mathematical models.

van de Vijver DAMC. et al, (2013), AIDS (London, England), 27, 2943 - 2951

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