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Publications

SARS-CoV-2 within-host diversity and transmission.

Lythgoe KA. et al, (2021), Science (New York, N.Y.)

Time to evaluate COVID-19 contact-tracing apps.

Colizza V. et al, (2021), Nat Med, 27, 361 - 362

Bimodal distribution and set point HBV DNA viral loads in chronic infection: retrospective analysis of cohorts from the UK and South Africa

Downs L. et al, (2020)

Estimating hepatitis B virus cccDNA persistence in chronic infection

LYTHGOE K. et al, (2020), Virus Evolution

Coronavirus: full peer review in hours.

Sutherland WJ. and Lythgoe KA., (2020), Nature, 584

Number of HIV-1 founder variants is determined by the recency of the source partner infection

Villabona-Arenas CJ. et al, (2020), Science

Number of HIV-1 founder variants is determined by the recency of the source partner infection.

Villabona-Arenas CJ. et al, (2020), Science (New York, N.Y.), 369, 103 - 108

Number of HIV-1 founder variants is determined by the recency of the source partner infection

Villabona-Arenas CJ. et al, (2020), Science

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection.

Illingworth CJR. et al, (2020), PLoS pathogens, 16

Correction to: CpG‑creating mutations are costly in many human viruses (Evolutionary Ecology, (2020), 34, 3, (339-359), 10.1007/s10682-020-10039-z)

Caudill VR. et al, (2020), Evolutionary Ecology, 34, 361 - 362

Within-host genomics of SARS-CoV-2

Lythgoe K. et al, (2020)

Challenges in control of Covid-19: short doubling time and long delay to effect of interventions

Pellis L. et al, (2020)

Limited evolution despite years of measurable viremia in a cART-treated seronegative HIV-1 positive individual

Fryer H. et al, (2020)

Estimation of hepatitis B virus cccDNA persistence in chronic infection using within-host evolutionary rates

Lythgoe K. et al, (2020)

Bimodal distribution and set point HBV DNA viral loads in chronic infection: retrospective analysis of cohorts from the UK and South Africa

Downs LO. et al, (2020)

CpG-creating mutations are costly in many human viruses.

Caudill VR. et al, (2020), Evolutionary ecology, 34, 339 - 359

HIV-1 founder variant multiplicity is determined by the infection stage of the source partner

Villabona-Arenas CJ. et al, (2019)

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

Illingworth C. et al, (2019)

Biotic analogies for self-organising cities

Narraway C. et al, (2019), Environment and Planning B: Urban Analytics and City Science

CpG-creating Mutations are Costly in Many Human Viruses

Caudill V. et al, (2019)

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