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Publications

The Clostridioides difficile species problem: global phylogenomic analysis uncovers three ancient, toxigenic, genomospecies

Knight DR. et al, (2020)

High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing.

Sanderson ND. et al, (2020), Genome research

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study.

Eyre DW. et al, (2020), eLife, 9

Artificial intelligence driven assessment of routinely collected healthcare data is an effective screening test for COVID-19 in patients presenting to hospital

Soltan AAS. et al, (2020)

In vitro Activity of Omadacycline, a New Tetracycline Analog, and Comparators Against Clostridioides difficile.

Begum K. et al, (2020), Antimicrobial agents and chemotherapy

Hospital Admission Location Prediction via Deep Interpretable Networks for the Year-round Improvement of Emergency Patient Care

el-Bouri R. et al, (2020), IEEE Journal of Biomedical and Health Informatics

Metagenomic sequencing as a clinical diagnostic tool for infectious diseases: a systematic review and meta-analysis

Govender K. et al, (2020)

RNA polymerase mutations cause cephalosporin resistance in clinical Neisseria gonorrhoeae isolates.

Palace SG. et al, (2020), eLife, 9

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines.

Bush SJ. et al, (2020), GigaScience, 9

Risk factors for Klebsiella pneumoniae carbapenemase (KPC) gene acquisition and clinical outcomes across multiple bacterial species

Mathers A. et al, (2020), Journal of Hospital Infection

Cystodistension injuries and long-term bladder functional outcomes: A unique case series from medical malpractice

Goldsmith L. et al, (2020), Journal of Clinical Urology

Equations to predict antimicrobial minimum inhibitory concentrations in Neisseria gonorrhoeae using molecular antimicrobial resistance determinants

Demczuk W. et al, (2019), Antimicrobial Agents and Chemotherapy

Optimizing DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae direct from urine samples

Street TL. et al, (2019), Journal of Clinical Microbiology

Hash-based core genome multi-locus sequencing typing for Clostridium difficile

EYRE D. et al, (2019), Journal of Clinical Microbiology

Ethnically diverse urban transmission networks of Neisseria gonorrhoeae without evidence of HIV serosorting

Dave J. et al, (2019), Sexually Transmitted Infections

Impact of intended and relative dose intensity of R-CHOP in a large, consecutive cohort of elderly diffuse large B-cell lymphoma patients treated with curative intent: no difference in cumulative incidence of relapse comparing patients by age.

Eyre TA. et al, (2019), Journal of internal medicine, 285, 681 - 692

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

Bush S. et al, (2019)

RNA polymerase mutations cause cephalosporin resistance in clinical Neisseria gonorrhoeae isolates

Palace S. et al, (2019)

The global challenge of Candida auris in the intensive care unit.

Cortegiani A. et al, (2019), Critical care (London, England), 23

Carbapenem-resistant Enterobacteriaceae dispersal from sinks is linked to drain position and drainage rates in a laboratory model system.

Aranega-Bou P. et al, (2019), The Journal of hospital infection, 102, 63 - 69

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