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PANINI: Pangenome Neighbour Identification for Bacterial Populations.

Journal article

Abudahab K. et al, (2019), Microbial genomics, 5

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa.

Journal article

Park SE. et al, (2018), Nature Communications, 9

Gene exchange drives the ecological success of a multi-host bacterial pathogen.

Journal article

Richardson EJ. et al, (2018), Nature ecology & evolution, 2, 1468 - 1478

Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey.

Journal article

Harris SR. et al, (2018), The Lancet. Infectious diseases, 18, 758 - 768

Genomic epidemiology of Candida auris within the United Kingdom, and the future of whole genome sequencing typing

Conference paper

Rhodes J. et al, (2018), MEDICAL MYCOLOGY, 56, S28 - S28

Recent Asian origin of chytrid fungi causing global amphibian declines.

Journal article

O'Hanlon SJ. et al, (2018), Science (New York, N.Y.), 360, 621 - 627

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.

Journal article

Rhodes J. et al, (2018), Emerging microbes & infections, 7

Integrated view of Vibrio cholerae in the Americas.

Journal article

Domman D. et al, (2017), Science (New York, N.Y.), 358, 789 - 793

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.

Journal article

Mostowy RJ. et al, (2017), Molecular biology and evolution, 34, 2537 - 2554

Phandango: an interactive viewer for bacterial population genomics.

Journal article

Hadfield J. et al, (2017), Bioinformatics (Oxford, England)

Microreact: visualizing and sharing data for genomic epidemiology and phylogeography.

Journal article

Argimón S. et al, (2016), Microbial genomics, 2

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