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Publications

Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines.

Argimón S. et al, (2020), Nature communications, 11

Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread.

David S. et al, (2019), Nature microbiology

Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study.

Lo SW. et al, (2019), The Lancet. Infectious diseases

Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection.

McNally A. et al, (2019), mBio, 10

PANINI: Pangenome Neighbour Identification for Bacterial Populations.

Abudahab K. et al, (2019), Microbial genomics, 5

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa.

Park SE. et al, (2018), Nature Communications, 9

Gene exchange drives the ecological success of a multi-host bacterial pathogen.

Richardson EJ. et al, (2018), Nature ecology & evolution, 2, 1468 - 1478

Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey.

Harris SR. et al, (2018), The Lancet. Infectious diseases, 18, 758 - 768

Genomic epidemiology of Candida auris within the United Kingdom, and the future of whole genome sequencing typing

Rhodes J. et al, (2018), MEDICAL MYCOLOGY, 56, S28 - S28

Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi.

Fisher MC. et al, (2018), Scientific reports, 8

Recent Asian origin of chytrid fungi causing global amphibian declines.

O'Hanlon SJ. et al, (2018), Science (New York, N.Y.), 360, 621 - 627

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.

Rhodes J. et al, (2018), Emerging microbes & infections, 7

Integrated view of Vibrio cholerae in the Americas.

Domman D. et al, (2017), Science (New York, N.Y.), 358, 789 - 793

Emergence and clonal spread of colistin resistance due to multiple mutational mechanisms in carbapenemase-producing Klebsiella pneumoniae in London.

Otter JA. et al, (2017), Scientific reports, 7

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.

Mostowy RJ. et al, (2017), Molecular biology and evolution, 34, 2537 - 2554

Phandango: an interactive viewer for bacterial population genomics.

Hadfield J. et al, (2017), Bioinformatics (Oxford, England)

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland.

Reuter S. et al, (2017), Genome research, 27

Population genetic structuring of methicillin-resistant Staphylococcus aureus clone EMRSA-15 within UK reflects patient referral patterns.

Donker T. et al, (2017), Microbial genomics, 3

Occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in the European survey of carbapenemase-producing Enterobacteriaceae (EuSCAPE): a prospective, multinational study.

Grundmann H. et al, (2017), The Lancet. Infectious diseases, 17, 153 - 163

The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.

Bayliss SC. et al, (2017), Frontiers in microbiology, 8

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