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Publications

Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year.

Kendall M. et al, (2023), Nat Commun, 14

Large-scale calibration and simulation of COVID-19 epidemiologic scenarios to support healthcare planning.

Groves-Kirkby N. et al, (2022), Epidemics, 42

Projected outcomes of universal testing and treatment in a generalised HIV epidemic in Zambia and South Africa (the HPTN 071 [PopART] trial): a modelling study.

Probert WJM. et al, (2022), The lancet. HIV, 9, e771 - e780

The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA.

Zhao L. et al, (2022), Proceedings. Biological sciences, 289

Epidemiological dynamics of bacteriocin competition and antibiotic resistance.

Lehtinen S. et al, (2022), Proceedings. Biological sciences, 289

Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models.

Hinch R. et al, (2022), Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 380

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway.

Willett BJ. et al, (2022), Nature microbiology, 7

Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions.

Panovska-Griffiths J. et al, (2022), Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 380

A rapid, integrated method to monitor HIV viral load, drug resistance, and transmission patterns from finger-prick blood samples

Chaudron SE. et al, (2022), JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, 25, 19 - 20

Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial - BCPP/ Ya Tsie trial.

Magosi LE. et al, (2022), eLife, 11

A highly virulent variant of HIV-1 circulating in the Netherlands.

Wymant C. et al, (2022), Science (New York, N.Y.), 375, 540 - 545

Publisher Correction: Monitoring key epidemiological parameters of SARS-CoV-2 transmission.

Kraemer MUG. et al, (2022), Nat Med

Lineage replacement and evolution captured by the United Kingdom Covid Infection Survey

Lythgoe K. et al, (2022)

Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions

Panovska-Griffiths J. et al, (2022)

The hyper-transmissible SARS-CoV-2 Omicron variant exhibits significant antigenic change, vaccine escape and a switch in cell entry mechanism

Willett B. et al, (2022)

Depressive symptoms and HIV risk behaviours among adolescents enrolled in the HPTN071 (PopART) trial in Zambia and South Africa.

Shanaube K. et al, (2022), PloS one, 17

Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study.

Twohig KA. et al, (2022), The Lancet. Infectious diseases, 22, 35 - 42

Rates of viral suppression in a cohort of people with stable HIV from two community models of ART delivery versus facility-based HIV care in Lusaka, Zambia: a cluster-randomised, non-inferiority trial nested in the HPTN 071 (PopART) trial.

Limbada M. et al, (2022), The lancet. HIV, 9, e13 - e23

Slowly declining growth rates and dynamic reporting delays characterise the Monkeypox epidemic in the UK over May-August 2022

Panovska-Griffiths J. et al, (2022)

Viral burdens are associated with age and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection related sampling bias

Fryer H. et al, (2022)

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