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Publications

Prevalence of persistent SARS-CoV-2 in a large community surveillance study.

Ghafari M. et al, (2024), Nature

Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts.

Ferretti L. et al, (2023), Nature

Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study.

Hall M. et al, (2023), Lancet Microbe

Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda.

Monod M. et al, (2023), Nature microbiology

Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda.

Monod M. et al, (2023), medRxiv

Directional predictions of HIV transmission with optimised genomics in cohorts of serodiscordant couples

Zhao L. et al, (2023)

Correction: Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.

Fryer HR. et al, (2023), PLoS pathogens, 19

Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey.

Lythgoe KA. et al, (2023), Proceedings. Biological sciences, 290

Reply to Ekström and Ottersen: Real-time access to data during outbreaks is a key to avoid a local epidemic becoming a global pandemic.

Stenseth NC. et al, (2023), Proceedings of the National Academy of Sciences of the United States of America, 120

Limited emergence of resistance to integrase strand transfer inhibitors (INSTIs) in ART-experienced participants failing dolutegravir-based antiretroviral therapy: a cross-sectional analysis of a Northeast Nigerian cohort.

Abdullahi A. et al, (2023), The Journal of antimicrobial chemotherapy, 78, 2000 - 2007

Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.

Fryer HR. et al, (2023), PLoS pathogens, 19

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1.

Tsui JL-H. et al, (2023), Science (New York, N.Y.), 381, 336 - 343

Uptake of medical male circumcision with household-based testing, and the association of traditional male circumcision and HIV infection.

Zewdie K. et al, (2023), AIDS (London, England), 37, 795 - 802

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1.

Balakrishna S. et al, (2023), The Journal of antimicrobial chemotherapy, 78, 656 - 664

How to avoid a local epidemic becoming a global pandemic.

Stenseth NC. et al, (2023), Proceedings of the National Academy of Sciences of the United States of America, 120

Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year.

Kendall M. et al, (2023), Nat Commun, 14

Learning patterns of HIV-1 co-resistance to broadly neutralizing antibodies with reduced subtype bias using multi-task learning

Igiraneza AB. et al, (2023)

Quantification of the time-varying epidemic growth rate and of the delays between symptom onset and presenting to healthcare for the mpox epidemic in the UK in 2022

Panovska-Griffiths J. et al, (2023)

Large-scale calibration and simulation of COVID-19 epidemiologic scenarios to support healthcare planning.

Groves-Kirkby N. et al, (2022), Epidemics, 42

Projected outcomes of universal testing and treatment in a generalised HIV epidemic in Zambia and South Africa (the HPTN 071 [PopART] trial): a modelling study.

Probert WJM. et al, (2022), The lancet. HIV, 9, e771 - e780

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