Uridine monophosphate (UMP) kinase is a conserved enzyme that catalyzes the ATP-driven conversion of uridylate monophosphate into uridylate diphosphate, an essential metabolic step. In prokaryotes, the enzyme exists as a homohexamer that is regulated by various metabolites. Whereas the enzymatic mechanism of UMP kinase (UK) is well-characterized, the molecular basis of its regulation remains poorly understood. Here we report the crystal structure of UK from Bacillus anthracis (BA1797) in complex with ATP at 2.82 A resolution. It reveals that the cofactor, in addition to binding in the active sites, also interacts with separate binding pockets located near the center of the hexameric structure. The existence of such an allosteric binding site had been predicted by biochemical studies, but it was not identified in previous crystal structures of prokaryotic UKs. We show that this putative allosteric pocket is conserved across different bacterial species, suggesting that it is a feature common to bacterial UKs, and we present a structural model for the allosteric regulation of this enzyme.

Original publication

DOI

10.1016/j.jmb.2008.06.078

Type

Journal article

Journal

Journal of molecular biology

Publication Date

09/2008

Volume

381

Pages

1098 - 1105

Addresses

Oxford Protein Production Facility, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Roosevelt Drive, Oxford OX3 7BN, UK.

Keywords

Eukaryotic Cells, Prokaryotic Cells, Bacillus anthracis, Coenzymes, Nucleoside-Phosphate Kinase, Nucleotides, Crystallography, X-Ray, Allosteric Site, Amino Acid Sequence, Protein Structure, Quaternary, Protein Structure, Secondary, Models, Molecular, Molecular Sequence Data