Genetically distinct within-host subpopulations of hepatitis C virus persist after Direct-Acting Antiviral treatment failure.
Zhao L. et al, (2025), PLoS pathogens, 21
Prevalence of persistent SARS-CoV-2 in a large community surveillance study.
Ghafari M. et al, (2024), Nature
Revisiting the origins of the Sobemovirus genus: A case for ancient origins of plant viruses.
Ghafari M. et al, (2024), PLoS Pathog, 20
Determinants of SARS-CoV-2 within-host evolutionary rates in persistently infected individuals
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A quantitative evaluation of the impact of vaccine roll-out rate and coverage on reducing deaths: insights from the first 2 years of COVID-19 epidemic in Iran.
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The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
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Reconstructing the evolutionary history of human, simian, and prosimian immunodeficiency viruses
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Insights into SARS-CoV-2 in Angola during the COVID-19 Peak: Molecular Epidemiology and Genome Surveillance
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Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models.
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A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data.
Ghafari M. et al, (2022), Nature communications, 13
Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza.
Ghafari M. et al, (2022), Molecular biology and evolution, 39
Investigating the evolutionary origins of the first three SARS-CoV-2 variants of concern
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