Accessible, realistic genome simulation with selection using stdpopsim.
Gower G. et al, (2025), bioRxiv
Estimating evolutionary and demographic parameters via ARG-derived IBD.
Huang Z. et al, (2025), PLoS genetics, 21
A general and efficient representation of ancestral recombination graphs
KELLEHER J. and WONG HY., (2024), Genetics
tstrait: a quantitative trait simulator for ancestral recombination graphs.
Tagami D. et al, (2024), Bioinformatics (Oxford, England)
A forest is more than its trees: haplotypes and ancestral recombination graphs
Fritze H. et al, (2024)
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations.
Lauterbur ME. et al, (2023), eLife, 12
Link-Ancestors: Fast simulation of local ancestry with tree sequence software
Tsambos G. et al, (2023), Bioinformatics Advances, 3
link-ancestors: Fast simulation of local ancestry with tree sequence software
Tsambos G. et al, (2023)
Bayesian inference of ancestral recombination graphs
KELLEHER J., (2022), PLOS Computational Biology
GA4GH: International policies and standards for data sharing across genomic research and healthcare.
Rehm HL. et al, (2021), Cell genomics, 1