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Publications

Bayesian inference of ancestral recombination graphs

KELLEHER J., (2022), PLOS Computational Biology

A unified genealogy of modern and ancient genomes

WONG HY. et al, (2022), Science

Efficient ancestry and mutation simulation with msprime 1.0.

Baumdicker F. et al, (2021), Genetics

GA4GH: International policies and standards for data sharing across genomic research and healthcare.

Rehm HL. et al, (2021), Cell genomics, 1

A unified genealogy of modern and ancient genomes

Wohns AW. et al, (2021)

Lessons Learned from Bugs in Models of Human History.

Ragsdale AP. et al, (2020), American journal of human genetics, 107, 583 - 588

A community-maintained standard library of population genetic models

Adrion JR. et al, (2020), eLife, 9

Accounting for long-range correlations in genome-wide simulations of large cohorts.

Nelson D. et al, (2020), PLoS genetics, 16

Efficiently Summarizing Relationships in Large Samples: A General Duality Between Statistics of Genealogies and Genomes

Ralph P. et al, (2020), Genetics, genetics.303253.2020 - genetics.303253.2020

Coalescent Simulation with msprime.

Kelleher J. and Lohse K., (2020), 2090, 191 - 230

Publisher Correction: Inferring whole-genome histories in large population datasets.

Kelleher J. et al, (2019), Nature genetics

Inferring whole-genome histories in large population datasets.

Kelleher J. et al, (2019), Nature genetics, 51, 1330 - 1338

Linkage disequilibrium, recombination and haplotype structure

McVean G. and Kelleher J., (2019), Handbook of Statistical Genomics, 1, 51 - 85

Coupling Wright-Fisher and coalescent dynamics for realistic simulation of population-scale datasets

Nelson D. et al, (2019)

Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes.

Haller BC. et al, (2019), Molecular ecology resources, 19, 552 - 566

htsget: a protocol for securely streaming genomic data.

Kelleher J. et al, (2019), Bioinformatics (Oxford, England), 35, 119 - 121

Efficient pedigree recording for fast population genetics simulation.

Kelleher J. et al, (2018), PLoS computational biology, 14

Inferring the ancestry of everyone

Kelleher J. et al, (2018)

Bioconda: sustainable and comprehensive software distribution for the life sciences.

Grüning B. et al, (2018), Nature methods, 15, 475 - 476

Efficient pedigree recording for fast population genetics simulation

Kelleher J. et al, (2018)

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