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Bayesian inference of ancestral recombination graphs

Journal article

KELLEHER J., (2022), PLOS Computational Biology

A unified genealogy of modern and ancient genomes

Journal article

WONG HY. et al, (2022), Science

Efficient ancestry and mutation simulation with msprime 1.0.

Journal article

Baumdicker F. et al, (2021), Genetics

Lessons Learned from Bugs in Models of Human History.

Journal article

Ragsdale AP. et al, (2020), American journal of human genetics, 107, 583 - 588

A community-maintained standard library of population genetic models

Journal article

Adrion JR. et al, (2020), eLife, 9

Accounting for long-range correlations in genome-wide simulations of large cohorts.

Journal article

Nelson D. et al, (2020), PLoS genetics, 16

Efficiently Summarizing Relationships in Large Samples: A General Duality Between Statistics of Genealogies and Genomes

Journal article

Ralph P. et al, (2020), Genetics, genetics.303253.2020 - genetics.303253.2020

Coalescent Simulation with msprime.

Chapter

Kelleher J. and Lohse K., (2020), 2090, 191 - 230

Publisher Correction: Inferring whole-genome histories in large population datasets.

Journal article

Kelleher J. et al, (2019), Nature genetics

Inferring whole-genome histories in large population datasets.

Journal article

Kelleher J. et al, (2019), Nature genetics, 51, 1330 - 1338

Linkage disequilibrium, recombination and haplotype structure

Chapter

McVean G. and Kelleher J., (2019), Handbook of Statistical Genomics, 1, 51 - 85

Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes.

Journal article

Haller BC. et al, (2019), Molecular ecology resources, 19, 552 - 566

htsget: a protocol for securely streaming genomic data.

Journal article

Kelleher J. et al, (2019), Bioinformatics (Oxford, England), 35, 119 - 121

Efficient pedigree recording for fast population genetics simulation.

Journal article

Kelleher J. et al, (2018), PLoS computational biology, 14

Inferring the ancestry of everyone

Kelleher J. et al, (2018)

Bioconda: sustainable and comprehensive software distribution for the life sciences.

Journal article

Grüning B. et al, (2018), Nature methods, 15, 475 - 476

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