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Publications

Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections.

Giulieri SG. et al, (2022), eLife, 11

Targeted control of pneumolysin production by a mobile genetic element in Streptococcus pneumoniae.

Stevens EJ. et al, (2022), Microbial genomics, 8

Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections

Giulieri SG. et al, (2022)

Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study.

Young BC. et al, (2021), Microbial genomics, 7

Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis.

Earle SG. et al, (2021), PLoS Pathog, 17

Genome-wide association studies of global Mycobacterium tuberculosis resistance to thirteen antimicrobials in 10,228 genomes

The CRyPTIC Consortium None. et al, (2021)

Using Host Genetics to Infer the Global Spread and Evolutionary History of HCV Subtype 3a

Lin S-K. et al, (2021), Virus Evolution

Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the hospital environment: a bacterial genome-wide association study

Young BC. et al, (2021)

Evolutionary processes driving the rise and fall of Staphylococcus aureus ST239, a dominant hybrid pathogen

Gill JL. et al, (2021)

Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission

EYRE D. et al, (2021), PLoS Computational Biology

The past, present and future of ancient bacterial DNA.

Arning N. and Wilson DJ., (2020), Microbial genomics, 6

Dynamic linkage of COVID-19 test results between Public Health England's Second Generation Surveillance System and UK Biobank.

Armstrong J. et al, (2020), Microbial genomics

Generalized mean p-values for combining dependent tests: comparison of generalized central limit theorem and robust risk analysis

Wilson D., (2020)

Incidence of Microbial Infections in English UK Biobank Participants: Comparison with the General Population

Hilton B. et al, (2020)

GenomegaMap: within-species genome-wide dN/dS estimation from over 10,000 genomes.

Wilson DJ. and CRyPTIC Consortium None., (2020), Molecular biology and evolution

Generalized mean p-values for combining dependent tests: comparison of generalized central limit theorem and robust risk analysis.

Wilson DJ., (2020), Wellcome open research, 5

Sequential Monte Carlo with transformations.

Everitt RG. et al, (2020), Statistics and computing, 30, 663 - 676

Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system.

Crispell J. et al, (2019), eLife, 8

Reply to Goeman et al.: Trade-offs in model averaging using multilevel tests.

Wilson DJ., (2019), Proceedings of the National Academy of Sciences of the United States of America

The harmonic mean p-value for combining dependent tests (vol 116, pg 1195, 2019)

Wilson DJ., (2019), PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116, 21948 - 21948

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