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Publications

Evolutionary processes driving the rise and fall of Staphylococcus aureus ST239, a dominant hybrid pathogen

Gill JL. et al, (2021)

Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission

EYRE D. et al, (2021), PLoS Computational Biology

The past, present and future of ancient bacterial DNA.

Arning N. and Wilson DJ., (2020), Microbial genomics, 6

Dynamic linkage of COVID-19 test results between Public Health England's Second Generation Surveillance System and UK Biobank.

Armstrong J. et al, (2020), Microbial genomics

Generalized mean p-values for combining dependent tests: comparison of generalized central limit theorem and robust risk analysis

Wilson D., (2020)

Incidence of Microbial Infections in English UK Biobank Participants: Comparison with the General Population

Hilton B. et al, (2020)

GenomegaMap: within-species genome-wide dN/dS estimation from over 10,000 genomes.

Wilson DJ. and CRyPTIC Consortium None., (2020), Molecular biology and evolution

Generalized mean p-values for combining dependent tests: comparison of generalized central limit theorem and robust risk analysis.

Wilson DJ., (2020), Wellcome open research, 5

Sequential Monte Carlo with transformations.

Everitt RG. et al, (2020), Statistics and computing, 30, 663 - 676

Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system.

Crispell J. et al, (2019), eLife, 8

Reply to Goeman et al.: Trade-offs in model averaging using multilevel tests.

Wilson DJ., (2019), Proceedings of the National Academy of Sciences of the United States of America

The harmonic mean p-value for combining dependent tests (vol 116, pg 1195, 2019)

Wilson DJ., (2019), PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116, 21948 - 21948

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis.

Yang Y. et al, (2019), Bioinformatics (Oxford, England), 35, 3240 - 3249

Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884.

Cole K. et al, (2019), Microbiology resource announcements, 8

Reply to Held: When is a harmonic mean p-value a Bayes factor?

Wilson DJ., (2019), Proceedings of the National Academy of Sciences of the United States of America, 116, 5857 - 5858

Panton-Valentine leaukocidin is the key determinant of staphylococcus aureus pyomyositis in a bacterial GWAS

MOORE CATRIN. et al, (2019), eLife

Panton-Valentine leucocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial GWAS.

Young BC. et al, (2019), eLife, 8

GenomegaMap: within-species genome-wide dN/dS estimation from over 10,000 genomes

Wilson D. and The CRyPTIC Consortium None., (2019)

The harmonic mean p-value for combining dependent tests.

Wilson DJ., (2019), Proceedings of the National Academy of Sciences of the United States of America, 116, 1195 - 1200

Bayesian inference of ancestral dates on bacterial phylogenetic trees.

Didelot X. et al, (2018), Nucleic acids research, 46

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