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Search results (91)

« Back to Publications

Accounting for barriers to HIV infection in the recipient partner reveals frequent transient infections and explains transmission risk under viral suppression

Atkins KE. et al, (2026)

Natural selection driven by escape from shifting antibody classes shapes SARS-CoV-2 evolution

Hamilton C. et al, (2026)

Attenuation of HIV severity by slightly deleterious mutations can explain the long-term trajectory of virulence evolution.

Longley H. et al, (2025), PLoS computational biology, 21

SARS-CoV-2 genomic diversity and within-host evolution in individuals with persistent infection in the UK: an observational, longitudinal, population-based surveillance study.

Ghafari M. et al, (2025), The Lancet. Microbe, 6

Genetically distinct within-host subpopulations of hepatitis C virus persist after Direct-Acting Antiviral treatment failure.

Zhao L. et al, (2025), PLoS pathogens, 21

Reconstructing the first COVID-19 pandemic wave with minimal data in England.

Chen S. et al, (2025), Epidemics, 50

Epidemiological and phylogenetic analyses of public SARS-CoV-2 data from Malawi.

Afuleni MK. et al, (2025), PLOS global public health, 5

Improving the representativeness of UK's national COVID-19 Infection Survey through spatio-temporal regression and post-stratification.

Pouwels KB. et al, (2024), Nature communications, 15

Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods.

Cahuantzi R. et al, (2024), Proceedings of the National Academy of Sciences of the United States of America, 121

Prevalence of persistent SARS-CoV-2 in a large community surveillance study.

Ghafari M. et al, (2024), Nature, 626, 1094 - 1101

Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population.

Wei J. et al, (2024), Nature communications, 15

Lineage-aware evolutionary analysis of hepatitis C virus within-host dynamics

Zhao L. et al, (2024)

The social role of defective viral genomes in chronic viral infections: a commentary on Leeks et al. 2023.

Zhao L. and Lythgoe KA., (2023), Journal of evolutionary biology, 36, 1577 - 1581

Correction: Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.

Fryer HR. et al, (2023), PLoS pathogens, 19

Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey.

Lythgoe KA. et al, (2023), Proceedings. Biological sciences, 290

Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.

Fryer HR. et al, (2023), PLoS pathogens, 19

The evolution of SARS-CoV-2.

Markov PV. et al, (2023), Nature reviews. Microbiology, 21, 361 - 379

COVID-19 vaccination, risk-compensatory behaviours, and contacts in the UK.

Buckell J. et al, (2023), Scientific reports, 13

Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK.

Wei J. et al, (2023), Nature communications, 14

Reconstructing the first COVID-19 pandemic wave with minimal data in the UK

Chen S. et al, (2023)

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