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Search results (98)

« Back to Publications

Accounting for barriers to HIV infection in the recipient partner reveals frequent transient infections and explains transmission risk under viral suppression

Atkins KE. et al, (2026)

The cumulative incidence and infection hospitalization risk of SARS-CoV-2 by variant: a longitudinal study in England.

Gaughan C. et al, (2026), American journal of epidemiology, 195, 188 - 197

Natural selection driven by escape from shifting antibody classes shapes SARS-CoV-2 evolution

Hamilton C. et al, (2026)

Identification and Masking of Artefactual and Misleading Within-Host Variants in Deep-Sequencing SARS-CoV-2 Data

Anker K. et al, (2026)

Attenuation of HIV severity by slightly deleterious mutations can explain the long-term trajectory of virulence evolution.

Longley H. et al, (2025), PLoS computational biology, 21

SARS-CoV-2 genomic diversity and within-host evolution in individuals with persistent infection in the UK: an observational, longitudinal, population-based surveillance study.

Ghafari M. et al, (2025), The Lancet. Microbe, 6

Within-host bacterial evolution and the emergence of pathogenicity.

Tonkin-Hill G. et al, (2025), Nature microbiology, 10, 1829 - 1840

Identification of undetected SARS-CoV-2 infections by clustering of Nucleocapsid antibody trajectories.

Zwerwer LR. et al, (2025), Nature communications, 16

Incorporating acute HIV infection screening, same-day diagnosis and antiretroviral treatment into routine services for key populations at sexual health clinics in Indonesia: a baseline analysis of the INTERACT prospective study

Irwanto I. et al, (2025), Journal of the International AIDS Society, 28

Genetically distinct within-host subpopulations of hepatitis C virus persist after Direct-Acting Antiviral treatment failure.

Zhao L. et al, (2025), PLoS pathogens, 21

Reconstructing the first COVID-19 pandemic wave with minimal data in England.

Chen S. et al, (2025), Epidemics, 50

Epidemiological and phylogenetic analyses of public SARS-CoV-2 data from Malawi.

Afuleni MK. et al, (2025), PLOS global public health, 5

Estimates of HIV-1 within-host recombination rates across the whole genome.

Longley H. et al, (2025), Virus evolution, 11

Improving the representativeness of UK's national COVID-19 Infection Survey through spatio-temporal regression and post-stratification.

Pouwels KB. et al, (2024), Nature communications, 15

Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods.

Cahuantzi R. et al, (2024), Proceedings of the National Academy of Sciences of the United States of America, 121

Prevalence of persistent SARS-CoV-2 in a large community surveillance study.

Ghafari M. et al, (2024), Nature, 626, 1094 - 1101

Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population.

Wei J. et al, (2024), Nature communications, 15

Determinants of SARS-CoV-2 within-host evolutionary rates in persistently infected individuals

Ghafari M. et al, (2024)

Lineage-aware evolutionary analysis of hepatitis C virus within-host dynamics

Zhao L. et al, (2024)

The social role of defective viral genomes in chronic viral infections: a commentary on Leeks et al. 2023.

Zhao L. and Lythgoe KA., (2023), Journal of evolutionary biology, 36, 1577 - 1581

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