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Search results (47)

« Back to Publications

SARS-CoV-2 genomic diversity and within-host evolution in individuals with persistent infection in the UK: an observational, longitudinal, population-based surveillance study.

Ghafari M. et al, (2025), The Lancet. Microbe, 6

Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses from the Plant Viruses Subcommittee, 2025.

Rubino L. et al, (2025), The Journal of general virology, 106

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2.

Pekar JE. et al, (2025), Cell, 188, 3167 - 3183.e18

Genetically distinct within-host subpopulations of hepatitis C virus persist after Direct-Acting Antiviral treatment failure.

Zhao L. et al, (2025), PLoS pathogens, 21

Large-scale genomic surveillance reveals immunosuppression drives mutation dynamics in persistent SARS-CoV-2 infections

Khurana M. et al, (2025)

Prevalence of persistent SARS-CoV-2 in a large community surveillance study.

Ghafari M. et al, (2024), Nature, 626, 1094 - 1101

Revisiting the origins of the Sobemovirus genus: A case for ancient origins of plant viruses.

Ghafari M. et al, (2024), PLoS pathogens, 20

Determinants of SARS-CoV-2 within-host evolutionary rates in persistently infected individuals

Ghafari M. et al, (2024)

Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity

Ferretti L. et al, (2024)

Understanding evolutionary and functional relationships of RNA polymerases in plant and fungal viruses through structural modeling and divergence date estimations

Gracy J. et al, (2024)

Lineage-aware evolutionary analysis of hepatitis C virus within-host dynamics

Zhao L. et al, (2024)

A quantitative evaluation of the impact of vaccine roll-out rate and coverage on reducing deaths: insights from the first 2 years of COVID-19 epidemic in Iran.

Ghafari M. et al, (2023), BMC medicine, 21

Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey.

Lythgoe KA. et al, (2023), Proceedings. Biological sciences, 290

Insights into SARS-CoV-2 in Angola during the COVID-19 peak: Molecular epidemiology and genome surveillance.

Francisco NM. et al, (2023), Influenza and other respiratory viruses, 17

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2.

Pekar JE. et al, (2023)

The evolutionary history of hepaciviruses.

Li YQ. et al, (2023), bioRxiv

The evolution of SARS-CoV-2.

Markov PV. et al, (2023), Nature reviews. Microbiology, 21, 361 - 379

Insights into SARS-CoV-2 in Angola during the COVID-19 Peak: Molecular Epidemiology and Genome Surveillance

FRANCISCO NGIAMBUDULU. et al, (2023)

High number of SARS-CoV-2 persistent infections uncovered through genetic analysis of samples from a large community-based surveillance study

Ghafari M. et al, (2023)

Revisiting the origins of theSobemovirusgenus: a case for ancient origins of plant viruses

Ghafari M. et al, (2023)

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