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MOTIVATION: High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, memory-efficient, and stringent read mapping tool offering a variety of analytical output functions, with an emphasis on geno-typing. AVAILABILITY: http://snpomatic.sourceforge.net CONTACT: mm6@sanger.ac.uk.

Type

Journal article

Journal

Bioinformatics

Publication Date

2009