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We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

Original publication

DOI

10.2807/1560-7917.es.2020.25.32.2001410

Type

Journal article

Journal

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

Publication Date

08/2020

Volume

25

Addresses

The European Centre for Disease Prevention and Control, Stockholm, Sweden.

Keywords

WHO European Region sequencing laboratories and GISAID EpiCoV group, WHO European Region sequencing laboratories and GISAID EpiCoV group*, Humans, Coronavirus, Pneumonia, Viral, Coronavirus Infections, Severe Acute Respiratory Syndrome, RNA, Viral, Base Sequence, Genome, Viral, World Health Organization, Europe, Pandemics, Phylogeography, Spatio-Temporal Analysis, Betacoronavirus, RNA-Dependent RNA Polymerase, COVID-19, SARS-CoV-2